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Cheap Flights from Crete Heraklion to Naxos

Compare Crete Heraklion to Naxos flight deals

Find the cheapest month or even day of the year to fly to Naxos

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Flight deals from Crete Heraklion to Naxos

Looking for a cheap last-minute deal or the best return flight from Crete Heraklion to Naxos? Find the lowest prices on one-way and return tickets right here.
Naxos.R 510 per passenger.Departing Thu, 17 Sep.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Crete Heraklion on Thu, 17 Sep, arriving in Naxos.Price includes taxes and charges.From R 510, select.
Naxos.R 889 per passenger.Departing Tue, 26 May.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Crete Heraklion on Tue, 26 May, arriving in Naxos.Price includes taxes and charges.From R 889, select.
Naxos.R 1,213 per passenger.Departing Tue, 10 Mar.One-way flight with Aegean Airlines.Outbound indirect flight with Aegean Airlines, departs from Crete Heraklion on Tue, 10 Mar, arriving in Naxos.Price includes taxes and charges.From R 1,213, select.
Naxos.R 1,381 per passenger.Departing Sat, 1 Aug.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Crete Heraklion on Sat, 1 Aug, arriving in Naxos.Price includes taxes and charges.From R 1,381, select.
Naxos.R 1,381 per passenger.Departing Tue, 16 Jun.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Crete Heraklion on Tue, 16 Jun, arriving in Naxos.Price includes taxes and charges.From R 1,381, select.
Naxos.R 1,381 per passenger.Departing Sat, 11 Jul.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Crete Heraklion on Sat, 11 Jul, arriving in Naxos.Price includes taxes and charges.From R 1,381, select.
Naxos.R 1,617 per passenger.Departing Thu, 29 Oct.One-way flight with Aegean Airlines.Outbound indirect flight with Aegean Airlines, departs from Crete Heraklion on Thu, 29 Oct, arriving in Naxos.Price includes taxes and charges.From R 1,617, select.
Naxos.R 1,646 per passenger.Departing Sat, 18 Apr.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Sat, 18 Apr, arriving in Naxos.Price includes taxes and charges.From R 1,646, select.

Find the cheapest month to fly from Crete Heraklion to Naxos

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Crete Heraklion to Naxos flights are currently cheapest in September.
Feb
from R 1,873
Mar
from R 1,213
Apr
from R 1,646
May
from R 889
Jun
from R 1,381
Jul
from R 1,381
Aug
from R 1,381
Sep
from R 510
Oct
from R 1,617
Nov
Find prices
Dec
Find prices
Jan
Find prices

Direct flights from Crete Heraklion to Naxos

Crete Heraklion to Naxos: Alternative routes

Compare routes from Crete Heraklion to Naxos below. You may find an airport to fly into that's cheaper, faster, or easier than Naxos.

Naxos

1km from central Naxos
ClosestCheapest
from R 510
Search flights

Paros

24km from central Naxos
from R 1,248
Search flights

Mykonos

37km from central Naxos
from R 511
Search flights

Heraklion to Naxos: Flight information

The things to know before you go.
Cheapest flight foundR 510
Cheapest month to flySeptember
Average flight time50 mins
Most popular airlineAegean Airlines
Average flights per week6

Finding cheap flights from Crete Heraklion to Naxos: Frequently asked questions

The best price we found for a return flight from Crete Heraklion to Naxos is R 1,344. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
50 minutes is the average flight time from Crete Heraklion to Naxos.
Aegean Airlines and Olympic Air fly direct from Crete Heraklion to Naxos.
As of February 2026, there are 6 flights per week flying from Crete Heraklion to Naxos.
The cheapest month to fly from Crete Heraklion to Naxos is usually September.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Crete Heraklion Airport to Naxos Airport on Thursday, 3 September 2026.
Yes – the average flight time is 50 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Naxos but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Naxos is around 40 days in advance, so don’t leave your flight to the last minute.
Currently, Aegean Airlines offers the cheapest flight tickets to Naxos.

Travelling from Heraklion Airport (HER) to Naxos Airport (JNX): what you need to know

  • Give yourself plenty of time to catch your HER to JNX flight. As a general rule, arrive two hours before international departures and an hour ahead for domestic flights.

  • Flying during a peak month like August? Public holidays and other popular periods can mean longer queues at check-in and security. Play things extra safe and arrive up to four hours before an international flight and two hours before domestic departures.

  • Opt for a stopover if you want to break up your flight. Simply deselect 'Direct flights only' to look at all your options for tickets from Heraklion Airport to Naxos Airport. Eleftherios Venizelos International Airport is a popular stopover on the HER to JNX route.

How to find the cheapest flights from Heraklion Airport (HER) to Naxos Airport (JNX)

  • The lowest price we've seen for a one-way Heraklion Airport to Naxos Airport flight is R 510. A return plane ticket right now is R 1,344. Depending on the availability and when you book, these fares may change.

  • It's a good idea to book in advance if you want to get cheap tickets from HER to JNX. That's because airlines change prices based on demand, which tends to increase closer to departure.

  • Getting cheap flights from Heraklion Airport to Naxos Airport is more likely if you're flexible with your travel plans. Use the 'Whole month' search function to see the lowest fares throughout the month and score a great deal.

  • There's no need to check every day to see if fares have gone down when you create a Price Alert. We'll notify you as soon as the price changes on cheap flights from HER to JNX.

  • Lock in the perfect flight for you by using the filters. To see the 'Best,' 'Cheapest' or 'Fastest' flights from Heraklion Airport to Naxos Airport, use the 'Sort by' function. You can also filter results by airline, arrival and departure times, and journey duration.

Handy information about Heraklion Airport (HER)

  • Heraklion Airport gets top marks for its on-time performance. 80.18% of flights that take off from HER reach their destination without delay.

  • Central Heraklion to Heraklion Airport is around 3 kilometres. Depending on traffic, it'll take about 10 minutes to get there if you're catching a cab, ride-sharing or driving.

  • The journey on public transport will take about 15 minutes.

  • Catching an early flight from Heraklion Airport to Naxos Airport? Avoid the last-minute rush to the airport (and sneak in some extra precious sleep) by picking one of these stays close to HER:

Arriving at Naxos Airport (JNX)

  • The last thing you want is a long journey to your hotel if you're getting in late on a Heraklion Airport to Naxos Airport flight. Reserve one of these accommodation options near JNX instead:

  • Go wherever you want, whenever you want with a Naxos Airport rental car. Book your wheels from IDEA MOBILITY, Carwiz or Avance and experience more of Naxos and beyond.

  • Booking your ride from Naxos Airport about one week ahead can help you get the best possible rate.

Getting from Naxos Airport (JNX) to central Naxos

  • Naxos Airport to the centre of Naxos has a drive time of about 5 minutes. It's approximately 3 kilometres away.

  • Travelling on public transport will take you around 40 minutes.

When to fly to Naxos Airport (JNX)

  • The quietest month for a flight from Heraklion Airport to Naxos Airport is January, while July is the most popular. Choose the best time to go to Naxos based on whether you prefer a bustling atmosphere or a more laid-back vibe.

  • Lock in your flight from Heraklion Airport to Naxos Airport for August if you'd like to explore Naxos during its warmest month. You can expect temperatures of between 23ºC (73ºF) and 28ºC (82ºF).

  • January has average temperatures of between 9ºC (48ºF) and 15ºC (59ºF). Look for cheap tickets from HER to JNX around that time if you want to travel in cooler conditions.

Explore more of Greece

  • You've done Naxos, now it's time to explore other corners of Greece. Journey about 177 kilometres north-west to Athens to check off its popular sights. From Museum of the Centre for the Acropolis Studies to Acropolis of Athens and The Parthenon, you'll have a full itinerary ahead.

  • Around 451 kilometres north-west of Naxos, Thessaloniki is another favourite stop in Greece. Experience major highlights starting with Arch of Galerius, Aristotelous Square and Museum of Byzantine Culture.

Plan the rest of your trip from Heraklion to Naxos

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.