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Cheap Flights from Manila Ninoy Aquino to Kota Kinabalu

Compare Manila Ninoy Aquino to Kota Kinabalu flight deals

Find the cheapest month or even day of the year to fly to Kota Kinabalu

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Flight deals from Manila Ninoy Aquino to Kota Kinabalu

Looking for a cheap last-minute deal or the best return flight from Manila Ninoy Aquino Airport to Kota Kinabalu Airport? If you want to travel next month, return fares start from R 2,202. Find the lowest prices on one-way and return tickets right here.
Kota Kinabalu.R 961 per passenger.Departing Sun, 8 Nov.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Sun, 8 Nov, arriving in Kota Kinabalu.Price includes taxes and charges.From R 961, select.
Kota Kinabalu.R 961 per passenger.Departing Sun, 17 Jan.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Sun, 17 Jan, arriving in Kota Kinabalu.Price includes taxes and charges.From R 961, select.
Kota Kinabalu.R 980 per passenger.Departing Mon, 1 Feb.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Mon, 1 Feb, arriving in Kota Kinabalu.Price includes taxes and charges.From R 980, select.
Kota Kinabalu.R 997 per passenger.Departing Sun, 9 Aug.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Sun, 9 Aug, arriving in Kota Kinabalu.Price includes taxes and charges.From R 997, select.
Kota Kinabalu.R 997 per passenger.Departing Fri, 2 Oct.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Fri, 2 Oct, arriving in Kota Kinabalu.Price includes taxes and charges.From R 997, select.
Kota Kinabalu.R 999 per passenger.Departing Wed, 16 Sep.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Wed, 16 Sep, arriving in Kota Kinabalu.Price includes taxes and charges.From R 999, select.
Kota Kinabalu.R 1,026 per passenger.Departing Fri, 31 Jul.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Fri, 31 Jul, arriving in Kota Kinabalu.Price includes taxes and charges.From R 1,026, select.
Kota Kinabalu.R 1,037 per passenger.Departing Wed, 3 Mar.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Wed, 3 Mar, arriving in Kota Kinabalu.Price includes taxes and charges.From R 1,037, select.
Kota Kinabalu.R 1,182 per passenger.Departing Mon, 19 Apr.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Mon, 19 Apr, arriving in Kota Kinabalu.Price includes taxes and charges.From R 1,182, select.
Kota Kinabalu.R 1,213 per passenger.Departing Wed, 26 May.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Wed, 26 May, arriving in Kota Kinabalu.Price includes taxes and charges.From R 1,213, select.
Kota Kinabalu.R 1,230 per passenger.Departing Wed, 2 Jun.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Wed, 2 Jun, arriving in Kota Kinabalu.Price includes taxes and charges.From R 1,230, select.
Kota Kinabalu.R 1,338 per passenger.Departing Wed, 2 Dec.One-way flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Wed, 2 Dec, arriving in Kota Kinabalu.Price includes taxes and charges.From R 1,338, select.
Kota Kinabalu.R 3,040 per passenger.Departing Thu, 1 Jul.One-way flight with Scoot.Outbound indirect flight with Scoot, departs from Manila Ninoy Aquino on Thu, 1 Jul, arriving in Kota Kinabalu.Price includes taxes and charges.From R 3,040, select.

Find the cheapest month to fly from Manila Ninoy Aquino to Kota Kinabalu

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Manila Ninoy Aquino to Kota Kinabalu flights are currently cheapest in November.
Jul
from R 1,026
Aug
from R 997
Sep
from R 999
Oct
from R 997
Nov
from R 961
Dec
from R 1,338
Jan
from R 961
Feb
from R 980
Mar
from R 1,037
Apr
from R 1,182
May
from R 1,213
Jun
from R 1,230

Direct flights from Manila Ninoy Aquino to Kota Kinabalu

Manila Ninoy Aquino to Kota Kinabalu: Alternative routes

Compare routes from Manila Ninoy Aquino to Kota Kinabalu below. You may find an airport to fly into that's cheaper, faster, or easier than Kota Kinabalu.

Kota Kinabalu

6km from central Kota Kinabalu
ClosestCheapest
from R 961
Search flights

Manila to Kota Kinabalu: Flight information

The things to know before you go.
Cheapest flight foundR 961
Cheapest month to flyNovember
Average flight time2 hrs, 13 mins
Most popular airlinePhilippines AirAsia
Average flights per week5

Finding cheap flights from Manila Ninoy Aquino to Kota Kinabalu: Frequently asked questions

The best price we found for a return flight from Manila Ninoy Aquino to Kota Kinabalu is R 2,108. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
2 hours and 13 minutes is the average flight time from Manila Ninoy Aquino to Kota Kinabalu.
Philippines AirAsia flies direct from Manila Ninoy Aquino to Kota Kinabalu.
As of July 2026, there are 5 flights per week flying from Manila Ninoy Aquino to Kota Kinabalu.
The cheapest month to fly from Manila Ninoy Aquino to Kota Kinabalu is usually February.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Manila Ninoy Aquino Airport to Kota Kinabalu Airport on Wednesday, 3 February 2027.
Yes – the average flight time is 2 hours and 13 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Kota Kinabalu but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Kota Kinabalu is around 40 days in advance, so don’t leave your flight to the last minute.

Currently, Philippines AirAsia offers the cheapest flight tickets to Kota Kinabalu.

Flying from Manila Ninoy Aquino Airport (MNL) to Kota Kinabalu Airport (BKI): what you need to know

  • The average duration of a direct flight from Manila Ninoy Aquino Airport to Kota Kinabalu Airport is 2 hours 10 minutes.

  • Manila and Kota Kinabalu are in the same timezone, UTC+8.

  • Each week, there are four Manila Ninoy Aquino Airport to Kota Kinabalu Airport flights. To take off as soon as possible, take the 16:15 Philippines AirAsia flight. If you're eager to make the most of your day before flying, the last flight is at 23:10 with Philippines AirAsia.

  • To ensure you get on your MNL to BKI flight, leave enough time for things like baggage drop and finding your gate. Arriving two hours ahead of international departures and an hour before domestic flights is the standard rule.

  • You'll likely experience longer queues in popular months such as May. Arriving up to four hours ahead of international flights and two hours for a domestic departure is a wise move.

  • Jetting into Kota Kinabalu (and then seeing more of Malaysia!) is a breeze with Philippines AirAsia. This popular airline has direct flights from Manila Ninoy Aquino Airport to Kota Kinabalu Airport.

  • Most travellers choose to travel with Philippines AirAsia on this route.

  • Philippines AirAsia is the most punctual carrier operating MNL to BKI flights, with 78.95% of its services reaching their destination on time.

  • We make it simple to book a flight with a stopover. To see all your options for tickets from Manila Ninoy Aquino Airport to Kota Kinabalu Airport, deselect 'Direct flights only.' Then, choose a flight offering a stop long enough to tour your chosen city. Stopovers between MNL and BKI include:

    • Kuala Lumpur International Airport

    • Hong Kong Intl Airport

    • Taipei Taiwan Taoyuan Airport

How to find the cheapest flights from Manila Ninoy Aquino Airport (MNL) to Kota Kinabalu Airport (BKI)

  • At the moment, R 961 is the lowest price we've found for a one-way Manila Ninoy Aquino Airport to Kota Kinabalu Airport flight. The best price for a return plane ticket is R 2,108. Keep in mind that fares can change due to demand at the time of booking.

  • Book two months before you want to fly. After looking at the numbers on our calendar, this is how far you should book ahead to secure cheap tickets from MNL to BKI.

  • July is the cheapest month for flights from Manila Ninoy Aquino Airport to Kota Kinabalu Airport. If you prefer to fly during a different time of year, the 'Whole month' tool will show you the lowest prices across every month.

  • Getting your hands on cheap flights from MNL to BKI is a cinch with Price Alerts. All you need to do is create one of these automatic alerts and we'll notify you when fares go down.

  • Tailor your flights using filters. Select your ideal arrival and departure times, total journey duration and airlines. You can also sort the results by 'Cheapest,' 'Fastest' or 'Best' flights from Manila Ninoy Aquino Airport to Kota Kinabalu Airport.

Handy information about Manila Ninoy Aquino Airport (MNL)

  • Of the flights that depart from Manila Ninoy Aquino Airport, 72% land on schedule at their destination.

  • Manila Ninoy Aquino Airport is around 11 kilometres from central Manila. If you're driving, ride-sharing or catching a taxi from the centre, it'll take you 30 minutes or so to get there, depending on the traffic.

  • You can expect a trip time of about 1 hour 10 minutes when using public transport.

  • Searching for a convenient hotel near MNL? If you've booked an early flight from Manila Ninoy Aquino Airport to Kota Kinabalu Airport, these accommodation options will put you moments from your check-in counter:

Arriving at Kota Kinabalu Airport (BKI)

Getting from Kota Kinabalu Airport (BKI) to central Kota Kinabalu

  • Kota Kinabalu Airport is approximately 8 kilometres from the centre of Kota Kinabalu. Driving there takes about 20 minutes.

  • Getting to the centre on public transport takes about 35 minutes.

When to fly to Kota Kinabalu Airport (BKI)

  • The quietest month for a flight from Manila Ninoy Aquino Airport to Kota Kinabalu Airport is March, while August is the most popular. Pick the ideal time to go to Kota Kinabalu based on whether you prefer a faster pace or a more relaxed vibe.

  • When booking your flight from Manila Ninoy Aquino Airport to Kota Kinabalu Airport, consider the type of weather you enjoy. May is the warmest month in Kota Kinabalu, with temperatures ranging from 24ºC (75ºF) to 31ºC (88ºF).

  • Search for cheap tickets from MNL to BKI in February if you want to travel in cooler conditions. Temperatures are at their lowest around then, ranging between 23ºC (73ºF) and 29ºC (84ºF) on average.

Explore more of Malaysia

  • Sandakan is just one of the many cities in Malaysia waiting to be explored once you've taken in the sights of Kota Kinabalu. Around 225 kilometres away to the east, well-known attractions include Sepilok Orangutan Rehabilitation Centre, Sun Bear Conservation Centre, Sepilok and Sandakan Rainforest Park.

  • Around 274 kilometres south-east of Kota Kinabalu, Tawau is another essential stop in Malaysia. Experience the best of this destination with a visit to Hot Springs Tawau, Teck Guan Cocoa Museum and Batu payung.

Plan the rest of your trip from Manila to Kota Kinabalu

Prices shown on this page are estimated lowest prices only. Found in the last 12 days.