Cheap Flights from Nagasaki to Tokyo

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Flight deals from Nagasaki Airport to Tokyo

Looking for a cheap last-minute deal or the best return flight from Nagasaki Airport to Tokyo? If you want to travel next month, return fares start from R 1,308. Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Nagasaki to Tokyo

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Nagasaki to Tokyo flights are currently cheapest in June.

Direct flights from Nagasaki to Tokyo

Alternative Nagasaki to Tokyo routes

Looking for the cheapest, fastest or easiest route from Nagasaki to Tokyo? You could fly into the following airports instead.

Nagasaki to Tokyo: Flight information

The things to know before you go.
Cheapest flight foundR 359
Cheapest month to flyJune
Average flight time1 hr, 53 mins
Most popular airlineANA (All Nippon Airways)
Average flights per week363

Finding cheap flights from Nagasaki to Tokyo: Frequently asked questions

There are 3 airports in Tokyo: Tokyo Haneda, Tokyo Narita and Ibaraki.
The best price we found for a return flight from Nagasaki to Tokyo is R 718. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
1 hour and 52 minutes is the average flight time from Nagasaki to Tokyo.
ANA (All Nippon Airways), Japan Airlines and Solaseed Air fly direct from Nagasaki to Tokyo.
As of April 2026, there are 363 flights per week flying from Nagasaki to Tokyo.
The cheapest month to fly from Nagasaki to Tokyo is usually June.
If you're flying from Nagasaki Airport, the cheapest airport near Tokyo is Tokyo Narita – which is 63.7 km away from the centre of Tokyo. We've found flights into this airport from R 718.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Nagasaki Airport to Tokyo on Tuesday, 30 June 2026.
Yes – the average flight time is 1 hour and 52 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Tokyo but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Tokyo is around 40 days in advance, so don’t leave your flight to the last minute.
In April, the average temperature is usually around 19°C. August is typically the warmest month in Tokyo, when it usually averages around 28°C. You can expect the least rain in February. The coldest month is February, with temperatures averaging 15°C. The rainiest month is May.
Currently, Jetstar Japan offers the cheapest flight tickets to Tokyo.

Flying from Nagasaki Airport (NGS) to Tokyo: what you need to know

  • Expect to be travelling for 2 hours. On average, that's the duration of a direct flight from Nagasaki Airport to Tokyo.

  • Tokyo's timezone is UTC+9, which is the same as Nagasaki (the location of Nagasaki Airport).

  • The busiest route is from Nagasaki Airport (NGS) to Tokyo Haneda International Airport (HND). You can choose from 82 weekly services between these two airports. If you'd like to get on your way as soon as you can, the earliest flight from NGS to HND is the 07:25 JAL option. If you'd rather fly out later on, the last departure is at 21:10 with ANA.

  • To avoid missing your NGS to Tokyo flight, leave enough time to check in and drop off your luggage. Arriving two hours ahead of international departures and one hour before domestic flights is the general rule.

  • You'll likely experience longer lines during popular months like January. Arriving up to four hours in advance for an international flight and two hours for domestic departures is a good idea.

  • Start your trip at NGS and travel nonstop to Tokyo Haneda International Airport (HND). That's where you can expect to touch down when searching for Nagasaki Airport to Tokyo tickets.

  • Choose from a variety of airlines offering direct flights from Nagasaki Airport to Tokyo. Book your journey with one of these:

  • Travelling from central Nagasaki to NGS takes about 1 hour by public transport. If you drive, ride-share or grab a taxi, you'll cover the 19 kilometres in 45 minutes or so, depending on traffic conditions.

  • Planning to catch an early flight from Nagasaki Airport to Tokyo? Avoid the last-minute rush to the airport (and sneak in some extra precious sleep) by choosing one of these hotels close to NGS:

  • Nagasaki Airport maintains a solid on-time performance, reducing the likelihood of delays. Departures from NGS arrive on schedule 83% of the time.

  • NGS is located at 593 Mishimamachi, Omura.

How to find the cheapest flights from Nagasaki Airport (NGS) to Tokyo

  • R 359 is the lowest price we've seen for a one-way Nagasaki Airport to Tokyo flight. A return plane ticket right now is R 718. Depending on when you book and the availability, these fares could change.

  • Get cheap flights from NGS to Tokyo by booking two months ahead. Based on our research, that's the sweet spot for picking up a bargain.

  • July is the best month for scoring an amazing deal on Nagasaki Airport to Tokyo tickets. If you'd like to travel during a different time of year, the 'Whole month' tool will show you the lowest prices for every month.

  • You don't need to check in daily to find out if fares have dropped when you create a Price Alert. We'll update you the moment there's an even bigger deal on cheap flights from NGS to Tokyo.

  • Choose your ideal arrival and departure times, airlines and number of stops with our filters. Then, sort the results for your flight from Nagasaki Airport to Tokyo by 'Cheapest,' 'Best' or 'Fastest.'

Airports in Tokyo

Tokyo Haneda International Airport (HND)

  • The distance from Tokyo Haneda International Airport (HND) to central Tokyo is roughly 19 kilometres. It'll take you about 25 minutes to reach the centre driving.

  • When travelling on public transport, expect a journey time of about 30 minutes.

  • If you're coming in on a late flight from Nagasaki Airport to Tokyo, few things beat the convenience of staying near the terminal. Grab your suitcases from the carousel and then be showered and relaxing not long after at one of these hotels near HND:

  • Booking your ride from Tokyo Haneda International Airport around three weeks ahead of your flight from NGS to Tokyo can help you get the lowest rate.

  • The address for HND is 3丁目 Hanedakuko, Ota.

Tokyo Narita International Airport (NRT)

  • Tokyo Narita International Airport (NRT) is about 56 kilometres from central Tokyo. After your flight from Nagasaki Airport to Tokyo, it'll take you around 1 hour 5 minutes to reach the heart of the city in a taxi or ride-share.

  • If you're catching public transport, it'll take about 1 hour.

  • Hang the 'Do not disturb' sign on your door and relax at a hotel near NRT. Here are a few options where you can take a load off after your NGS to Tokyo flight:

  • Get what you want, not just what's left over. Securing your ride from NRT four weeks in advance often means better prices and a wider selection of vehicles.

  • You'll find Tokyo Narita International Airport at 成田空港第2PTB(バス), Narita.

Best time to go to Tokyo

  • March is the busiest month for flights from Nagasaki Airport to Tokyo. To escape the crowds, visit Tokyo in December.

  • Lock in a Nagasaki Airport to Tokyo plane ticket with a departure in August to explore the city during its warmest month. Expect temperatures to range from 23ºC (73ºF) to 29ºC (84ºF).

  • Search for cheap tickets from NGS to Tokyo in January if you'd rather travel during cooler conditions. Temperatures are at their lowest then, ranging between 9ºC (48ºF) and 15ºC (59ºF) on average.

More about Tokyo

  • When it comes to looking for somewhere to rest your head, you'll find the most popular stays in Tokyo right here. Explore these hotels as soon as you've locked in your flight from Nagasaki Airport to Tokyo:

  • All great journeys should include some sightseeing. Sensho-ji, Tokyo Skytree and Ginza Central Street are attractions you won't want to skip in Tokyo.

Explore more of Japan

  • Tokyo is easy to fall in love with, but there are so many other corners of Japan just waiting to be explored. About 402 kilometres west of Tokyo, a visit to Osaka will keep your itinerary packed. Start with attractions like Dotonbori, Osaka Castle and Universal Studios Japan.

  • If you're eager to discover another corner of Japan, head for Nagoya, about 257 kilometres west of Tokyo. Nagoya Castle, Ninomaru Garden and Sky Promenade are key highlights.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.