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Cheap Flights from Tokyo to San Juan

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      Travellers and cabin class, 1 Adult, Economy

      Compare Tokyo to San Juan flight deals

      Find the cheapest month or even day of the year to fly to San Juan

      Book the best San Juan fare with no extra fees

      Flight deals from Tokyo to San Juan

      Looking for a cheap last-minute deal or the best return flight from Tokyo to San Juan? If you want to travel next month, return fares start from R 17,221. Find the lowest prices on one-way and return tickets right here.
      San Juan.R 9,083 per passenger.Departing Mon, 14 Sep.One-way flight with Zipair.Outbound indirect flight with Zipair, departs from Tokyo Narita on Mon, 14 Sep, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 9,083, select.
      San Juan.R 9,321 per passenger.Departing Sat, 14 Nov.One-way flight with Zipair.Outbound indirect flight with Zipair, departs from Tokyo Narita on Sat, 14 Nov, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 9,321, select.
      San Juan.R 9,974 per passenger.Departing Thu, 22 Oct.One-way flight with Eastar Jet.Outbound indirect flight with Eastar Jet, departs from Tokyo Narita on Thu, 22 Oct, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 9,974, select.
      San Juan.R 10,538 per passenger.Departing Tue, 26 Jan.One-way flight with Zipair.Outbound indirect flight with Zipair, departs from Tokyo Narita on Tue, 26 Jan, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 10,538, select.
      San Juan.R 12,705 per passenger.Departing Tue, 25 Aug.One-way flight with Korean Air.Outbound indirect flight with Korean Air, departs from Tokyo Narita on Tue, 25 Aug, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 12,705, select.
      San Juan.R 14,121 per passenger.Departing Fri, 4 Dec.One-way flight with WestJet.Outbound indirect flight with WestJet, departs from Tokyo Narita on Fri, 4 Dec, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 14,121, select.
      San Juan.R 15,779 per passenger.Departing Sat, 3 Apr.One-way flight with Philippine Airlines.Outbound indirect flight with Philippine Airlines, departs from Tokyo Haneda on Sat, 3 Apr, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 15,779, select.
      San Juan.R 16,439 per passenger.Departing Thu, 25 Feb.One-way flight with WestJet.Outbound indirect flight with WestJet, departs from Tokyo Narita on Thu, 25 Feb, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 16,439, select.
      San Juan.R 17,122 per passenger.Departing Fri, 26 Mar.One-way flight with Delta.Outbound indirect flight with Delta, departs from Tokyo Haneda on Fri, 26 Mar, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 17,122, select.
      San Juan.R 17,679 per passenger.Departing Sat, 26 Jun.One-way flight with Qatar Airways.Outbound indirect flight with Qatar Airways, departs from Tokyo Haneda on Sat, 26 Jun, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 17,679, select.
      San Juan.R 17,777 per passenger.Departing Fri, 16 Jul.One-way flight with Qatar Airways.Outbound indirect flight with Qatar Airways, departs from Tokyo Narita on Fri, 16 Jul, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 17,777, select.
      San Juan.R 23,460 per passenger.Departing Sun, 1 Aug.One-way flight with Qatar Airways.Outbound indirect flight with Qatar Airways, departs from Tokyo Haneda on Sun, 1 Aug, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From R 23,460, select.

      Find the cheapest month to fly from Tokyo to San Juan

      We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to San Juan flights are currently cheapest in September.
      Aug
      from R 12,705
      Sep
      from R 9,083
      Oct
      from R 9,974
      Nov
      from R 9,321
      Dec
      from R 14,121
      Jan
      from R 10,538
      Feb
      from R 16,439
      Mar
      from R 17,122
      Apr
      from R 15,779
      May
      Find prices
      Jun
      from R 17,679
      Jul
      from R 17,777

      Alternative Tokyo to San Juan routes

      Looking for the cheapest, fastest or easiest route from Tokyo to San Juan? You could fly into the following airports instead.

      San Juan Isla Grande

      1km from central San Juan
      Closest
      Search flights

      San Juan Luis Munoz Marin

      11km from central San Juan
      Cheapest
      from R 9,083
      Search flights

      Roosevelt Roads

      55km from central San Juan
      Search flights

      Ponce

      70km from central San Juan
      Search flights

      Vieques

      82km from central San Juan
      Search flights

      Culebra

      85km from central San Juan
      Search flights

      Tokyo to San Juan: Flight information

      The things to know before you go.
      Cheapest flight foundR 9,083
      Cheapest month to flySeptember

      Finding cheap flights from Tokyo to San Juan: Frequently asked questions

      There are 6 airports in San Juan: San Juan Isla Grande, San Juan Luis Munoz Marin, Roosevelt Roads, Ponce, Vieques, and Culebra.
      The best price we found for a return flight from Tokyo to San Juan is R 17,221. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
      Currently, there are no airlines that fly direct from Tokyo to San Juan. But we found flights with one or more stops from R 17,221.
      As of August 2026, there are no flights flying from Tokyo to San Juan.
      The cheapest month to fly from Tokyo to San Juan is usually September.
      If you're flying from Tokyo, the cheapest airport near San Juan is San Juan Luis Munoz Marin – which is 11.3 km away from the centre of San Juan. We've found flights into this airport from R 17,221.
      After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to San Juan on Monday, 14 September 2026.
      No airlines currently offer direct flights between Tokyo and San Juan. Most routes have one or more stops.
      We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to San Juan but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

      We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to San Juan is around 40 days in advance, so don’t leave your flight to the last minute.

      In August, the average temperature is usually around 28°C. August is typically the warmest month in San Juan, when it usually averages around 29°C. You can expect the least rain in February. The coldest month is January, with temperatures averaging 23°C. The rainiest month is September.
      The cheapest airline that flies to San Juan is Zipair .

      Flying from Tokyo to San Juan: what you need to know

      • There are a couple of main airports you can take off from in Tokyo. Check out your options departing from Tokyo Haneda Airport (HND) or Tokyo Narita Airport (NRT) when searching for a flight from Tokyo to San Juan.

      • Disembark at San Juan Luis Munoz Marin Airport (SJU), the major arrival point in San Juan.

      • San Juan is 13 hours behind Tokyo and follows the UTC-4 timezone.

      • For a smooth journey, turn up at the airport two hours ahead of international flights and an hour before domestic departures. That way, you can comfortably board your Tokyo to San Juan flight.

      • You can expect bigger queues during popular months such as April. Arriving up to four hours in advance for an international flight and two hours for domestic departures is a wise move.

      How to find the cheapest flights from Tokyo to San Juan

      • Booking ahead of time is often the key to scoring a cheap Tokyo to San Juan flight. Fares tend to rise as demand increases, so the closer you get to departure, the more expensive your ticket may be.

      • If you're flexible with your travel plans, use the 'Whole month' search tool. It'll give you the lowest price across each month when looking for your plane ticket from Tokyo to San Juan.

      • Cut down on the time spent looking for cheap flights from Tokyo to San Juan by setting up a Price Alert. We'll send you an email or notification on the app when a new discounted fare appears.

      • Tailor your trip using filters. Select your ideal arrival and departure times, airlines and total journey duration. You can also sort the results by 'Best,' 'Fastest' or 'Cheapest' Tokyo to San Juan flights.

      Flying from Tokyo

      Tokyo Haneda Airport (HND)

      • Stopovers are the perfect opportunity to break up your trip — and perhaps even explore another city. When browsing Tokyo to San Juan flights leaving from Tokyo Haneda Airport, uncheck the 'Direct flights only' box to see where you can visit along the way. Popular options include:

        • Chicago O'Hare International Airport (ORD)

        • Atlanta Hartsfield-Jackson Airport (ATL)

        • New York John F. Kennedy Airport (JFK)

      • Located around 16 kilometres from the centre of Tokyo, HND can be reached in about 25 minutes by car (depending on traffic). The journey on public transport is roughly 30 minutes.

      • Searching for a convenient hotel near Tokyo Haneda Airport? If you're boarding an early flight from Tokyo to San Juan, these stays will put you moments from check-in:

      • 77% of flights that leave from Tokyo Haneda Airport reach their destination on schedule.

      • HND's address is 3丁目 Hanedakuko, Ota.

      Tokyo Narita Airport (NRT)

      • Split up your Tokyo to San Juan flight with a stop so you can freshen up or tick a new place off your list. Popular stopovers between Tokyo Narita Airport and San Juan include:

        • Dallas Fort Worth International Airport (DFW)

        • New York Newark Airport (EWR)

        • Boston Logan International Airport (BOS)

      • With public transport, you can travel from central Tokyo to NRT in around 1 hour. The airport is roughly 64 kilometres away. Driving will take you about 1 hour 5 minutes.

      • Get a head start on your holiday with an extra night away from home. Before your flight from Tokyo to San Juan, unwind in one of these hotels close to Tokyo Narita Airport:

      • 73% of flights leaving Tokyo Narita Airport arrive within the expected time frame.

      • The street address for NRT is 成田空港第2PTB(バス), Narita.

      Arriving in San Juan

      San Juan Luis Munoz Marin Airport (SJU)

      • San Juan Luis Munoz Marin Airport (SJU) to central San Juan takes about 20 minutes by car. The centre is roughly 11 kilometres away.

      • Getting to the centre on public transport typically takes 1 hour.

      • The last thing you want is a lengthy journey to your hotel if you're getting in late on a flight from Tokyo to San Juan. Check in to one of these accommodation options near SJU instead:

      • Pick up a San Juan Luis Munoz Marin Airport rental car and explore San Juan and beyond with your own wheels. Sixt, Ace Rent a Car and U-Save are top outlets you can book with here.

      • For the lowest price, book your ride from San Juan Luis Munoz Marin Airport about two weeks in advance of your Tokyo to San Juan flight.

      San Juan Isla Grande Airport (SIG)

      Best time to go to San Juan

      • March is the quietest month for flights from Tokyo to San Juan, while July is the most popular. Choose the best time to visit San Juan based on whether you want a lively atmosphere or a more laid-back vibe.

      • When booking your Tokyo to San Juan tickets, consider the kind of weather you prefer. August is the warmest month in San Juan, with temperatures ranging from 24ºC (75ºF) to 32ºC (90ºF).

      • February has average temperatures of between 21ºC (70ºF) and 28ºC (82ºF). Search for cheap flights from Tokyo to San Juan around that time if you want to travel when it's cooler.

      More about San Juan

      • After booking your flight from Tokyo to San Juan, decide where you'll be dropping your bags. Make one of these options your base for exploring San Juan:

      • There are so many things to see and do in this city it can be hard to know where to start. Balneario El Escambron, La Garita del morro de san juan bahia and Beach San Juan are highlights which should be on any well-planned San Juan itinerary.

      Explore more of Puerto Rico

      • Bayamon is just one of the many cities in Puerto Rico waiting to be explored after you've seen San Juan. Around 13 kilometres to the southwest, top sights here include Ron del Barrilito - Hacienda Santa Ana, Parque de las Ciencias by Toroverde Power by Claro and Parque Recreativo Río Bayamón.

      • If you're looking to explore another corner of Puerto Rico, head for Carolina, about 18 kilometres southeast of San Juan. Isla Verde Beach, Carolina Public Beach and Balneario Isla Verde are highlights.

      Plan the rest of your trip from Tokyo to San Juan

      Prices shown on this page are estimated lowest prices only. Found in the last 12 days.