Cheap Flights from Naxos to Crete Heraklion

Compare Naxos to Crete Heraklion flight deals

Find the cheapest month or even day of the year to fly to Crete Heraklion

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Flight deals from Naxos to Crete Heraklion

Looking for a cheap last-minute deal or the best return flight from Naxos Airport to Crete Heraklion Airport? If you want to travel next month, return fares start from R 3,356. Find the lowest prices on one-way and return tickets right here.

Heraklion.R 1,055 per passenger.Departing Tue, 21 Jul.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Naxos on Tue, 21 Jul, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,055, select.

Heraklion.R 1,195 per passenger.Departing Tue, 19 Jan.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Tue, 19 Jan, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,195, select.

Heraklion.R 1,195 per passenger.Departing Wed, 21 Oct.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Wed, 21 Oct, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,195, select.

Heraklion.R 1,195 per passenger.Departing Mon, 1 Mar.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Mon, 1 Mar, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,195, select.

Heraklion.R 1,195 per passenger.Departing Mon, 7 Dec.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Mon, 7 Dec, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,195, select.

Heraklion.R 1,436 per passenger.Departing Sun, 8 Nov.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Sun, 8 Nov, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,436, select.

Heraklion.R 1,771 per passenger.Departing Sun, 13 Sep.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Sun, 13 Sep, arriving in Crete Heraklion.Price includes taxes and charges.From R 1,771, select.

Heraklion.R 2,380 per passenger.Departing Thu, 27 Aug.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Naxos on Thu, 27 Aug, arriving in Crete Heraklion.Price includes taxes and charges.From R 2,380, select.

Heraklion.R 2,380 per passenger.Departing Tue, 8 Sep.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Naxos on Tue, 8 Sep, arriving in Crete Heraklion.Price includes taxes and charges.From R 2,380, select.

Heraklion.R 2,769 per passenger.Departing Sat, 3 Oct.One-way flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Naxos on Sat, 3 Oct, arriving in Crete Heraklion.Price includes taxes and charges.From R 2,769, select.

Heraklion.R 3,140 per passenger.Departing Sat, 15 May.One-way flight with SKY express.Outbound indirect flight with SKY express, departs from Naxos on Sat, 15 May, arriving in Crete Heraklion.Price includes taxes and charges.From R 3,140, select.

Find the cheapest month to fly from Naxos to Crete Heraklion

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Naxos to Crete Heraklion flights are currently cheapest in July.

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Direct flights from Naxos to Crete Heraklion

Naxos to Crete Heraklion: Alternative routes

Compare routes from Naxos to Heraklion below. You may find an airport to fly into that's cheaper, faster, or easier than Crete Heraklion.

Crete Heraklion

4km from central Heraklion

ClosestCheapest

from R 1,055

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Sitia

90km from central Heraklion

from R 3,512

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Naxos to Heraklion: Flight information

The things to know before you go.

Cheapest flight found	R 1,055
Cheapest month to fly	July
Average flight time	54 mins
Most popular airline	Olympic Air
Average flights per week	6

Finding cheap flights from Naxos to Crete Heraklion: Frequently asked questions

How much are return flights from Naxos to Crete Heraklion?

The best price we found for a return flight from Naxos to Crete Heraklion is R 1,691. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

How long does it take to fly from Naxos to Crete Heraklion?

54 minutes is the average flight time from Naxos to Crete Heraklion.

Which airlines fly direct from Naxos to Crete Heraklion?

Olympic Air and Aegean Airlines fly direct from Naxos to Crete Heraklion.

How many flights are there a week from Naxos to Crete Heraklion?

As of July 2026, there are 6 flights per week flying from Naxos to Crete Heraklion.

When is the cheapest time to fly from Naxos to Crete Heraklion?

The cheapest month to fly from Naxos to Crete Heraklion is usually July.

Which upcoming date is cheapest to fly from Naxos Airport to Crete Heraklion Airport on?

After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Naxos Airport to Crete Heraklion Airport on Thursday, 30 July 2026.

Can I get a direct flight from Naxos Airport to Crete Heraklion Airport?

Yes – the average flight time is 54 minutes.

How can I find the best flight deal to Crete Heraklion?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Crete Heraklion but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

When is the best time to book flights to Heraklion?

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Heraklion is around 40 days in advance, so don’t leave your flight to the last minute.

Which is the cheapest airline to fly from Naxos Airport to Crete Heraklion with?

Currently, Aegean Airlines offers the cheapest flight tickets to Crete Heraklion.

Travelling from Naxos Airport (JNX) to Crete Heraklion Airport (HER): what you need to know

Jump on a direct flight from Naxos Airport to Crete Heraklion Airport and you'll be in the air for an average of 55 minutes.
Naxos and Heraklion follow the same timezone, UTC+2.
For a smooth journey, arrive at the airport two hours ahead of international flights and one hour before domestic departures. This way, you'll have plenty of time to catch your JNX to HER flight.
You can expect bigger queues during popular months like July. Arriving up to four hours ahead of an international flight and two hours for domestic departures will give you ample time for security and boarding.
Aegean Airlines has direct flights from Naxos Airport to Crete Heraklion Airport. Book with this popular airline, then get ready to check out the sights in Heraklion — and maybe even more of Greece if time allows.
The airline with the highest booking volume on this route is Aegean Airlines.
Enjoy a quick visit to another city or simply break up your journey with a stopover. Just uncheck 'Direct flights only' to see your options when searching for tickets from Naxos Airport to Crete Heraklion Airport. Many travellers pass through Athens International Airport on this route.

How to find the cheapest flights from Naxos Airport (JNX) to Crete Heraklion Airport (HER)

R 1,055 is the lowest price for a one-way Naxos Airport to Crete Heraklion Airport flight. A return flight starts at R 1,691. These fares may change depending on availability and demand.
To score cheap tickets from JNX to HER, book early. Airlines tend to offer lower fares when flights are first released.
The 'Whole month' search function shows you the cheapest flights from Naxos Airport to Crete Heraklion Airport throughout the entire month. It's a great way to find a bargain if your dates are flexible.
Save time searching for cheap flights from JNX to HER by setting up a Price Alert. You'll receive an email or push notification on the app when a new low fare is offered.
Tailor your trip with filters. Pick your departure and arrival times, total journey duration and airlines. You can also sort your results by 'Fastest,' 'Cheapest' or 'Best' flights from Naxos Airport to Crete Heraklion Airport.

Handy information about Naxos Airport (JNX)

Naxos Airport scores top marks for on-time performance. 84% of flights that depart JNX land on time.
Central Naxos to Naxos Airport is approximately 3 kilometres. Depending on traffic, it'll take you about 5 minutes to get there if you're driving, ride-sharing or catching a taxi.
The trip on public transport will take about 10 minutes.
Get your break off to a leisurely start by staying near JNX. Whether you're catching an early flight from Naxos Airport to Crete Heraklion Airport or just don't like being rushed, these stays have you covered:

Arriving at Crete Heraklion Airport (HER)

Reserve a hotel close to HER if you're on a late Naxos Airport to Crete Heraklion Airport flight. Select one of these options and skip the long transfer:
Travel at your own pace with a Crete Heraklion Airport rental car. Book your wheels from Surprice, Car & Go or Right Cars and see more of Heraklion and beyond.
For the lowest price, book your vehicle from Crete Heraklion Airport around three weeks before you set off.

Getting from Crete Heraklion Airport (HER) to central Heraklion

From Crete Heraklion Airport, Heraklion is approximately 5 kilometres away. It takes around 15 minutes to get to the centre driving.
Getting there on public transport typically takes 25 minutes.

When to fly to Crete Heraklion Airport (HER)

It's time to plan your travel dates for your flight from Naxos Airport to Crete Heraklion Airport. August is the busiest month to visit Heraklion. If you'd like a more relaxed vibe, go in March.
Before locking in your flight from Naxos Airport to Crete Heraklion Airport, consider the type of weather you enjoy. July is the warmest month in Heraklion, with temperatures ranging from 20ºC (68ºF) to 33ºC (91ºF).
Look for cheap tickets from JNX to HER in January if you want to travel in cooler conditions. Temperatures are at their lowest around then, ranging between 7ºC (45ºF) and 16ºC (61ºF) on average.

Explore more of Greece

Athens is just one of the many places in Greece waiting to be discovered once you've seen the sights of Heraklion. Around 322 kilometres away to the north-west, popular attractions include Acropolis of Athens, The Parthenon and Erechtheion.